| VarID | Gene | IMPACT | EFFECT | HGVS_c | HGVS_p | MAF | P-value | EffectSize(SE) |
|---|---|---|---|---|---|---|---|---|
| 10:113061768:A:G | TCF7L2 | MODIFIER | intron_variant | c.552+21642A>G | "" | 0.152674 | 9.141132414702508e-15 | 0.2(0.026) |
| 16:53773852:A:G | FTO | MODIFIER | intron_variant | c.46-36288A>G | "" | 0.504988 | 1.811340092619599e-14 | 0.14(0.019) |
| 10:113027253:T:C | TCF7L2 | MODIFIER | intron_variant | c.451-12772T>C | "" | 0.4783 | 1.496235656094436e-13 | 0.14(0.019) |
| 16:53805223:T:C | FTO | MODIFIER | intron_variant | c.46-4917T>C | "" | 0.531042 | 4.602565735813563e-11 | 0.12(0.019) |
| 17:37739849:T:C | HNF1B | MODIFIER | intron_variant | c.345-210A>G | "" | 0.493092 | 5.767664633922497e-11 | 0.12(0.019) |
| 10:112973123:T:C | TCF7L2 | MODIFIER | intron_variant | c.450+8499T>C | "" | 0.480014 | 7.798301105232577e-09 | 0.11(0.019) |
| 6:20760381:C:T | CDKAL1 | MODIFIER | intron_variant | c.517+1738C>T | "" | 0.519523 | 2.552701302661247e-08 | 0.11(0.019) |
| 12:4275678:T:G | CCND2-AS1 | MODIFIER | upstream_gene_variant | n.-201A>C | "" | 0.017244 | 3.7068072178257595e-08 | -0.42(0.077) |
| 7:28149792:T:C | JAZF1 | MODIFIER | intron_variant | c.115+30671A>G | "" | 0.500171 | 1.6788040181225588e-07 | -0.1(0.019) |
| 2:131306662:C:T | LOC440910-RAB6D | MODIFIER | intergenic_region | n.131306662C>T | "" | 0.024717 | 2.818382931264455e-07 | -0.32(0.063) |
| 4:82137288:C:A | RASGEF1B-HNRNPD | MODIFIER | intergenic_region | n.82137288C>A | "" | 0.011159 | 4.2756288615158643e-07 | 0.44(0.087) |
| 2:159522380:G:C | BAZ2B | MODIFIER | intron_variant | c.-3+33443C>G | "" | 0.000926 | 4.5708818961487516e-07 | -2.02(0.515) |
| 11:17186210:C:T | PIK3C2A | MODIFIER | intron_variant | c.-65-16404G>A | "" | 0.531625 | 6.902398038402426e-07 | 0.09(0.019) |
| 10:60074326:C:A | ANK3 | MODERATE | missense_variant | c.6555G>T | p.Gln2185His | 0.001063 | 7.498942093324558e-07 | 1.35(0.278) |
| 4:82060670:A:G | RASGEF1B-HNRNPD | MODIFIER | intergenic_region | n.82060670A>G | "" | 0.011673 | 7.620790100254115e-07 | 0.42(0.085) |
| 11:17240332:A:G | PIK3C2A-NUCB2 | MODIFIER | intergenic_region | n.17240332A>G | "" | 0.060216 | 8.165823713585923e-07 | 0.19(0.039) |
| 2:204517781:G:A | ICOS-PARD3B | MODIFIER | intergenic_region | n.204517781G>A | "" | 0.0018 | 9.141132414702508e-07 | -1.29(0.297) |
| 5:166022269:G:A | LOC102546299-LINC01947 | MODIFIER | intergenic_region | n.166022269G>A | "" | 0.000788 | 9.954054173515275e-07 | -2.4(0.676) |
| 2:164651879:C:T | GRB14-COBLL1 | MODIFIER | intergenic_region | n.164651879C>T | "" | 0.409976 | 1.016248692870695e-06 | -0.09(0.019) |
| 3:18708315:T:C | SATB1-AS1-KCNH8 | MODIFIER | intergenic_region | n.18708315T>C | "" | 0.00108 | 1.071519305237607e-06 | 1.33(0.282) |
| 8:107592046:C:T | ANGPT1-RSPO2 | MODIFIER | intergenic_region | n.107592046C>T | "" | 0.00072 | 1.1721953655481303e-06 | -2.43(0.686) |
| 3:96160398:T:C | MTHFD2P1-MIR8060 | MODIFIER | intergenic_region | n.96160398T>C | "" | 0.000788 | 1.1912420080273738e-06 | -2.18(0.584) |
| 6:20634655:T:C | CDKAL1 | MODIFIER | intron_variant | c.287-14638T>C | "" | 0.472609 | 1.199499303149378e-06 | -0.09(0.019) |
| 11:17045071:C:T | PLEKHA7-OR7E14P | MODIFIER | intergenic_region | n.17045071C>T | "" | 0.527443 | 1.2647363474711523e-06 | 0.09(0.019) |
| 9:119227504:T:A | BRINP1 | MODIFIER | intron_variant | c.685+11151A>T | "" | 0.00168 | 1.270574105208542e-06 | -1.22(0.279) |
| 7:48754087:G:T | ABCA13-CDC14C | MODIFIER | intergenic_region | n.48754087G>T | "" | 0.001543 | 1.3061708881318404e-06 | -1.35(0.314) |
| 11:17109702:T:C | PIK3C2A | MODIFIER | intron_variant | c.3544+730A>G | "" | 0.515461 | 1.3677288255958495e-06 | 0.09(0.019) |
| 2:131191169:C:T | PLEKHB2-POTEE | MODIFIER | intergenic_region | n.131191169C>T | "" | 0.030785 | 1.3963683610559361e-06 | -0.27(0.056) |
| 6:69738056:T:C | LMBRD1 | MODIFIER | intron_variant | c.563-41A>G | "" | 0.00276 | 1.5066070661867417e-06 | 0.82(0.169) |
| 6:20675064:A:G | CDKAL1 | MODIFIER | intron_variant | c.371+25687A>G | "" | 0.469181 | 1.5739828644662196e-06 | -0.09(0.019) |
| 3:48571765:G:A | COL7A1 | MODIFIER | intron_variant | c.7068+236C>T | "" | 0.006599 | 1.8197008586099826e-06 | -0.59(0.128) |
| 11:17237862:A:T | PIK3C2A-NUCB2 | MODIFIER | intergenic_region | n.17237862A>T | "" | 0.53315 | 1.9054607179632483e-06 | 0.09(0.019) |
| 19:44915533:T:C | APOC1 | MODIFIER | intron_variant | c.58+584T>C | "" | 0.213936 | 2.0090928126087276e-06 | -0.11(0.023) |
| 11:17590293:G:A | OTOG | MODIFIER | intron_variant | c.2904-1157G>A | "" | 0.008965 | 2.0511621788255668e-06 | -0.5(0.107) |
| 7:18779965:C:A | HDAC9 | MODIFIER | intron_variant | c.2214+12810C>A | "" | 0.001474 | 2.0511621788255668e-06 | -1.36(0.331) |
| 6:10593462:C:G | GCNT2 | MODIFIER | intron_variant | c.926-27889C>G | "" | 0.00204 | 2.1727011788637434e-06 | -1.07(0.247) |
| 13:101139832:C:T | NALCN | MODIFIER | intron_variant | c.2118+3248G>A | "" | 0.019901 | 2.6242185433844393e-06 | 0.31(0.066) |
| 4:147108517:A:G | TTC29-MIR548G | MODIFIER | intergenic_region | n.147108517A>G | "" | 0.728145 | 2.6977394324449205e-06 | -0.1(0.021) |
| 1:32895014:T:C | HPCA | MODIFIER | downstream_gene_variant | c.*1152T>C | "" | 0.001046 | 2.7415741719278807e-06 | 1.34(0.291) |
| 13:94103959:A:G | GPC6 | MODIFIER | intron_variant | c.877+76065A>G | "" | 0.001063 | 2.8973435877013213e-06 | -1.5(0.368) |
| 20:10132221:T:C | SNAP25-AS1 | MODIFIER | intron_variant | n.391-27827A>G | "" | 0.824289 | 2.910717118066608e-06 | -0.12(0.025) |
| 12:88826448:T:A | KITLG-LINC02458 | MODIFIER | intergenic_region | n.88826448T>A | "" | 0.992977 | 3.013006024186122e-06 | -0.63(0.134) |
| 3:187421732:A:G | RTP4-LINC02041 | MODIFIER | intergenic_region | n.187421732A>G | "" | 0.001457 | 3.0269134281013045e-06 | 1.09(0.233) |
| 5:50823074:C:T | PARP8 | MODIFIER | intron_variant | c.1860+674C>T | "" | 0.005554 | 3.1988951096913973e-06 | 0.57(0.122) |
| 11:16913809:C:T | PLEKHA7 | MODIFIER | intron_variant | c.222-42627G>A | "" | 0.001388 | 3.2433961734934934e-06 | -1.38(0.338) |
| 15:58173284:C:T | AQP9 | MODIFIER | intron_variant | c.376+79C>T | "" | 0.930031 | 3.4434993076333844e-06 | 0.17(0.037) |
| 10:112986029:G:A | TCF7L2 | MODIFIER | intron_variant | c.450+21405G>A | "" | 0.176637 | 3.475361614432061e-06 | -0.12(0.025) |
| 3:185772396:A:G | MIR548AQ | MODIFIER | upstream_gene_variant | n.-4492T>C | "" | 0.1235 | 3.7325015779572065e-06 | -0.13(0.029) |
| 1:206421718:C:T | SRGAP2 | MODIFIER | intron_variant | c.1494+444C>T | "" | 0.489818 | 3.749730022454834e-06 | 0.09(0.019) |
| 6:111215068:G:C | SLC16A10 | MODIFIER | intron_variant | c.1087-3746G>C | "" | 0.013267 | 3.837072454922784e-06 | -0.39(0.087) |
| 14:56184278:A:G | PELI2 | MODIFIER | intron_variant | c.207+5814A>G | "" | 0.001183 | 3.863669770540689e-06 | 1.21(0.266) |
| 11:133009762:G:A | OPCML | MODIFIER | intragenic_variant | n.133009762C>T | "" | 0.000926 | 3.908408957924017e-06 | 1.35(0.301) |
| 21:20675248:C:A | LINC02573-LINC00320 | MODIFIER | intergenic_region | n.20675248C>A | "" | 0.000994 | 4.139996748197304e-06 | -1.7(0.441) |
| 7:48617884:G:C | ABCA13 | MODIFIER | intron_variant | c.14837+2507G>C | "" | 0.001508 | 4.436086439314327e-06 | -1.27(0.307) |
| 5:43278469:C:T | NIM1K | MODIFIER | intron_variant | c.561+1144C>T | "" | 0.00048 | 4.602565735813563e-06 | 1.89(0.453) |
| 5:43331942:G:A | HMGCS1-CCL28 | MODIFIER | intergenic_region | n.43331942G>A | "" | 0.00048 | 4.613175745603791e-06 | 1.88(0.453) |
| 7:102152804:C:T | CUX1 | MODIFIER | intron_variant | c.708-5756C>T | "" | 0.047446 | 4.8640720569146186e-06 | 0.2(0.044) |
| 4:156053323:A:G | CTSO-PDGFC | MODIFIER | intergenic_region | n.156053323A>G | "" | 0.00084 | 4.8640720569146186e-06 | 1.39(0.309) |
| 18:52592201:G:C | DCC | MODIFIER | intron_variant | c.92-159853G>C | "" | 0.008382 | 4.977370849789361e-06 | 0.46(0.1) |
| 7:21035767:C:T | LINC01162-SP4 | MODIFIER | intergenic_region | n.21035767C>T | "" | 0.00108 | 5.000345349769783e-06 | -1.68(0.44) |
| 7:102207270:T:C | CUX1 | MODIFIER | intron_variant | c.3163+2100T>C | "" | 0.04784 | 5.116818355403073e-06 | 0.2(0.044) |
| 15:73689508:A:C | CD276 | MODIFIER | intron_variant | c.-55+5048A>C | "" | 0.009805 | 5.395106225151279e-06 | 0.42(0.092) |
| 4:142173283:T:C | INPP4B | MODIFIER | intron_variant | c.1359+349A>G | "" | 0.000926 | 5.45757861091271e-06 | 1.34(0.302) |
| 9:68731165:C:G | PIP5K1B | MODIFIER | intron_variant | c.-242-11336C>G | "" | 0.001131 | 5.662392890382535e-06 | 1.21(0.274) |
| 4:40799139:G:A | NSUN7 | MODIFIER | intron_variant | c.1400+235G>A | "" | 0.000703 | 5.780960474057175e-06 | 1.59(0.368) |
| 6:170287284:C:G | DLL1 | MODIFIER | intron_variant | c.670+955G>C | "" | 0.003308 | 5.874893525297769e-06 | -0.82(0.193) |
| 9:24291650:C:T | ELAVL2-IZUMO3 | MODIFIER | intergenic_region | n.24291650C>T | "" | 0.000634 | 5.984115950603199e-06 | 1.59(0.368) |
| 2:159090843:G:T | TANC1 | MODIFIER | intron_variant | c.62-6794G>T | "" | 0.000926 | 6.0534087475391365e-06 | -1.82(0.509) |
| 16:83499559:C:G | CDH13 | MODIFIER | intron_variant | c.1101+12904C>G | "" | 0.001097 | 6.095368972401693e-06 | 1.23(0.276) |
| 5:27792728:G:A | PURPL-LINC02103 | MODIFIER | intergenic_region | n.27792728G>A | "" | 0.001217 | 6.194410750767811e-06 | -1.41(0.354) |
| 6:34139897:G:A | GRM4 | MODIFIER | intron_variant | c.-363-6038C>T | "" | 0.000994 | 6.28058358813318e-06 | -1.67(0.441) |
| 22:50768762:C:G | RABL2B | MODIFIER | 3_prime_UTR_variant | c.*14G>C | "" | 0.004354 | 6.3241185137621965e-06 | 0.63(0.138) |
| 19:45654602:G:A | EML2-GIPR | MODIFIER | intergenic_region | n.45654602G>A | "" | 0.437453 | 6.353309318517436e-06 | -0.09(0.019) |
| 1:107344792:G:A | NTNG1 | MODIFIER | intron_variant | c.887+19870G>A | "" | 0.00204 | 6.546361740672747e-06 | -1.05(0.254) |
| 21:38052773:T:G | DSCR4 | MODIFIER | downstream_gene_variant | n.*1238A>C | "" | 0.001268 | 6.729766562843182e-06 | 1.13(0.253) |
| 9:24571456:C:T | IZUMO3-TUSC1 | MODIFIER | intergenic_region | n.24571456C>T | "" | 0.000583 | 6.792036326171843e-06 | 1.64(0.383) |
| 2:131393159:A:T | RAB6D-LINC01120 | MODIFIER | intergenic_region | n.131393159A>T | "" | 0.058468 | 6.85488226452662e-06 | -0.18(0.041) |
| 6:40769475:A:T | LRFN2-LOC101929555 | MODIFIER | intergenic_region | n.40769475A>T | "" | 0.004028 | 6.902398038402426e-06 | 0.65(0.144) |
| 5:172861130:C:T | ERGIC1 | MODIFIER | intron_variant | c.20+26697C>T | "" | 0.006034 | 7.0631755426296224e-06 | 0.53(0.117) |
| 3:172355265:C:T | FNDC3B | MODIFIER | intron_variant | c.2795+2182C>T | "" | 0.003754 | 7.079457843841373e-06 | 0.68(0.15) |
| 11:55137519:C:G | OR4A5-TRIM48 | MODIFIER | intergenic_region | n.55137519C>G | "" | 0.00132 | 7.430191378967021e-06 | 1.11(0.252) |
| 3:48504123:G:T | SHISA5 | MODIFIER | 5_prime_UTR_variant | c.-29C>A | "" | 0.004988 | 7.568328950209736e-06 | -0.64(0.149) |
| 4:84391240:C:T | LOC101928978-NKX6-1 | MODIFIER | intergenic_region | n.84391240C>T | "" | 0.003668 | 7.709034690644294e-06 | -0.74(0.174) |
| 5:161899351:T:C | GABRA1 | MODIFIER | 3_prime_UTR_variant | c.*1929T>C | "" | 0.012359 | 7.925013304804718e-06 | -0.4(0.091) |
| 6:6607089:T:C | LY86-AS1 | MODIFIER | intron_variant | n.195+15543A>G | "" | 0.001491 | 8.147042840208388e-06 | 1.04(0.235) |
| 1:30417149:C:T | LINC01648-MATN1 | MODIFIER | intergenic_region | n.30417149C>T | "" | 0.003394 | 8.165823713585922e-06 | -0.78(0.184) |
| 16:11450043:A:T | LOC400499 | MODIFIER | intron_variant | c.4257+566T>A | "" | 0.000583 | 8.184647881347903e-06 | -2.31(0.688) |
| 15:64785008:C:T | RBPMS2-PIF1 | MODIFIER | intergenic_region | n.64785008C>T | "" | 0.008159 | 8.203515443298177e-06 | 0.46(0.102) |
| 11:8762678:T:G | DENND2B | MODIFIER | intron_variant | c.-25-11953A>C | "" | 0.072746 | 8.260379495771783e-06 | -0.16(0.037) |
| 2:157559399:C:T | ACVR1C | MODIFIER | intron_variant | c.305-3067G>A | "" | 0.001388 | 8.356030182312474e-06 | -1.3(0.328) |
| 7:44222379:G:A | CAMK2B | MODIFIER | intron_variant | c.1598-1478C>T | "" | 0.170878 | 8.356030182312474e-06 | 0.11(0.025) |
| 21:43796704:C:T | RRP1 | MODIFIER | intron_variant | c.423-718C>T | "" | 0.001406 | 8.394599865193982e-06 | -1.25(0.314) |
| 5:161996258:T:C | LINC01202 | MODIFIER | intron_variant | n.77+4862A>G | "" | 0.012341 | 8.669618757582162e-06 | -0.39(0.09) |
| 1:212668338:A:G | FAM71A-BATF3 | MODIFIER | intergenic_region | n.212668338A>G | "" | 0.00072 | 9.31107875467831e-06 | 1.53(0.356) |
| 6:75304010:T:C | FILIP1 | MODIFIER | downstream_gene_variant | c.*4681A>G | "" | 0.02542 | 9.418895965228418e-06 | 0.26(0.058) |
| 11:108932495:T:A | DDX10 | MODIFIER | intron_variant | c.2451-7751T>A | "" | 0.000668 | 9.484184633008978e-06 | -2.23(0.677) |
| 1:83745091:C:T | LINC01725 | MODIFIER | intron_variant | n.280+5107G>A | "" | 0.00168 | 9.594006315159336e-06 | 0.97(0.218) |
| 11:119714668:C:T | NECTIN1 | MODIFIER | intron_variant | c.79+13807G>A | "" | 0.018769 | 9.616122783836638e-06 | -0.31(0.072) |
| 2:30107801:G:A | ALK-YPEL5 | MODIFIER | intergenic_region | n.30107801G>A | "" | 0.000891 | 9.88553094656939e-06 | -1.73(0.473) |
| 1:208351649:G:C | PLXNA2-LINC01717 | MODIFIER | intergenic_region | n.208351649G>C | "" | 0.009582 | 9.977000638225525e-06 | -0.45(0.104) |