Plotly Chart Demo

VarID Gene IMPACT EFFECT HGVS_c HGVS_p MAF P-value EffectSize(SE)
10:113061768:A:G TCF7L2 MODIFIER intron_variant c.552+21642A>G "" 0.152674 9.141132414702508e-15 0.2(0.026)
16:53773852:A:G FTO MODIFIER intron_variant c.46-36288A>G "" 0.504988 1.811340092619599e-14 0.14(0.019)
10:113027253:T:C TCF7L2 MODIFIER intron_variant c.451-12772T>C "" 0.4783 1.496235656094436e-13 0.14(0.019)
16:53805223:T:C FTO MODIFIER intron_variant c.46-4917T>C "" 0.531042 4.602565735813563e-11 0.12(0.019)
17:37739849:T:C HNF1B MODIFIER intron_variant c.345-210A>G "" 0.493092 5.767664633922497e-11 0.12(0.019)
10:112973123:T:C TCF7L2 MODIFIER intron_variant c.450+8499T>C "" 0.480014 7.798301105232577e-09 0.11(0.019)
6:20760381:C:T CDKAL1 MODIFIER intron_variant c.517+1738C>T "" 0.519523 2.552701302661247e-08 0.11(0.019)
12:4275678:T:G CCND2-AS1 MODIFIER upstream_gene_variant n.-201A>C "" 0.017244 3.7068072178257595e-08 -0.42(0.077)
7:28149792:T:C JAZF1 MODIFIER intron_variant c.115+30671A>G "" 0.500171 1.6788040181225588e-07 -0.1(0.019)
2:131306662:C:T LOC440910-RAB6D MODIFIER intergenic_region n.131306662C>T "" 0.024717 2.818382931264455e-07 -0.32(0.063)
4:82137288:C:A RASGEF1B-HNRNPD MODIFIER intergenic_region n.82137288C>A "" 0.011159 4.2756288615158643e-07 0.44(0.087)
2:159522380:G:C BAZ2B MODIFIER intron_variant c.-3+33443C>G "" 0.000926 4.5708818961487516e-07 -2.02(0.515)
11:17186210:C:T PIK3C2A MODIFIER intron_variant c.-65-16404G>A "" 0.531625 6.902398038402426e-07 0.09(0.019)
10:60074326:C:A ANK3 MODERATE missense_variant c.6555G>T p.Gln2185His 0.001063 7.498942093324558e-07 1.35(0.278)
4:82060670:A:G RASGEF1B-HNRNPD MODIFIER intergenic_region n.82060670A>G "" 0.011673 7.620790100254115e-07 0.42(0.085)
11:17240332:A:G PIK3C2A-NUCB2 MODIFIER intergenic_region n.17240332A>G "" 0.060216 8.165823713585923e-07 0.19(0.039)
2:204517781:G:A ICOS-PARD3B MODIFIER intergenic_region n.204517781G>A "" 0.0018 9.141132414702508e-07 -1.29(0.297)
5:166022269:G:A LOC102546299-LINC01947 MODIFIER intergenic_region n.166022269G>A "" 0.000788 9.954054173515275e-07 -2.4(0.676)
2:164651879:C:T GRB14-COBLL1 MODIFIER intergenic_region n.164651879C>T "" 0.409976 1.016248692870695e-06 -0.09(0.019)
3:18708315:T:C SATB1-AS1-KCNH8 MODIFIER intergenic_region n.18708315T>C "" 0.00108 1.071519305237607e-06 1.33(0.282)
8:107592046:C:T ANGPT1-RSPO2 MODIFIER intergenic_region n.107592046C>T "" 0.00072 1.1721953655481303e-06 -2.43(0.686)
3:96160398:T:C MTHFD2P1-MIR8060 MODIFIER intergenic_region n.96160398T>C "" 0.000788 1.1912420080273738e-06 -2.18(0.584)
6:20634655:T:C CDKAL1 MODIFIER intron_variant c.287-14638T>C "" 0.472609 1.199499303149378e-06 -0.09(0.019)
11:17045071:C:T PLEKHA7-OR7E14P MODIFIER intergenic_region n.17045071C>T "" 0.527443 1.2647363474711523e-06 0.09(0.019)
9:119227504:T:A BRINP1 MODIFIER intron_variant c.685+11151A>T "" 0.00168 1.270574105208542e-06 -1.22(0.279)
7:48754087:G:T ABCA13-CDC14C MODIFIER intergenic_region n.48754087G>T "" 0.001543 1.3061708881318404e-06 -1.35(0.314)
11:17109702:T:C PIK3C2A MODIFIER intron_variant c.3544+730A>G "" 0.515461 1.3677288255958495e-06 0.09(0.019)
2:131191169:C:T PLEKHB2-POTEE MODIFIER intergenic_region n.131191169C>T "" 0.030785 1.3963683610559361e-06 -0.27(0.056)
6:69738056:T:C LMBRD1 MODIFIER intron_variant c.563-41A>G "" 0.00276 1.5066070661867417e-06 0.82(0.169)
6:20675064:A:G CDKAL1 MODIFIER intron_variant c.371+25687A>G "" 0.469181 1.5739828644662196e-06 -0.09(0.019)
3:48571765:G:A COL7A1 MODIFIER intron_variant c.7068+236C>T "" 0.006599 1.8197008586099826e-06 -0.59(0.128)
11:17237862:A:T PIK3C2A-NUCB2 MODIFIER intergenic_region n.17237862A>T "" 0.53315 1.9054607179632483e-06 0.09(0.019)
19:44915533:T:C APOC1 MODIFIER intron_variant c.58+584T>C "" 0.213936 2.0090928126087276e-06 -0.11(0.023)
11:17590293:G:A OTOG MODIFIER intron_variant c.2904-1157G>A "" 0.008965 2.0511621788255668e-06 -0.5(0.107)
7:18779965:C:A HDAC9 MODIFIER intron_variant c.2214+12810C>A "" 0.001474 2.0511621788255668e-06 -1.36(0.331)
6:10593462:C:G GCNT2 MODIFIER intron_variant c.926-27889C>G "" 0.00204 2.1727011788637434e-06 -1.07(0.247)
13:101139832:C:T NALCN MODIFIER intron_variant c.2118+3248G>A "" 0.019901 2.6242185433844393e-06 0.31(0.066)
4:147108517:A:G TTC29-MIR548G MODIFIER intergenic_region n.147108517A>G "" 0.728145 2.6977394324449205e-06 -0.1(0.021)
1:32895014:T:C HPCA MODIFIER downstream_gene_variant c.*1152T>C "" 0.001046 2.7415741719278807e-06 1.34(0.291)
13:94103959:A:G GPC6 MODIFIER intron_variant c.877+76065A>G "" 0.001063 2.8973435877013213e-06 -1.5(0.368)
20:10132221:T:C SNAP25-AS1 MODIFIER intron_variant n.391-27827A>G "" 0.824289 2.910717118066608e-06 -0.12(0.025)
12:88826448:T:A KITLG-LINC02458 MODIFIER intergenic_region n.88826448T>A "" 0.992977 3.013006024186122e-06 -0.63(0.134)
3:187421732:A:G RTP4-LINC02041 MODIFIER intergenic_region n.187421732A>G "" 0.001457 3.0269134281013045e-06 1.09(0.233)
5:50823074:C:T PARP8 MODIFIER intron_variant c.1860+674C>T "" 0.005554 3.1988951096913973e-06 0.57(0.122)
11:16913809:C:T PLEKHA7 MODIFIER intron_variant c.222-42627G>A "" 0.001388 3.2433961734934934e-06 -1.38(0.338)
15:58173284:C:T AQP9 MODIFIER intron_variant c.376+79C>T "" 0.930031 3.4434993076333844e-06 0.17(0.037)
10:112986029:G:A TCF7L2 MODIFIER intron_variant c.450+21405G>A "" 0.176637 3.475361614432061e-06 -0.12(0.025)
3:185772396:A:G MIR548AQ MODIFIER upstream_gene_variant n.-4492T>C "" 0.1235 3.7325015779572065e-06 -0.13(0.029)
1:206421718:C:T SRGAP2 MODIFIER intron_variant c.1494+444C>T "" 0.489818 3.749730022454834e-06 0.09(0.019)
6:111215068:G:C SLC16A10 MODIFIER intron_variant c.1087-3746G>C "" 0.013267 3.837072454922784e-06 -0.39(0.087)
14:56184278:A:G PELI2 MODIFIER intron_variant c.207+5814A>G "" 0.001183 3.863669770540689e-06 1.21(0.266)
11:133009762:G:A OPCML MODIFIER intragenic_variant n.133009762C>T "" 0.000926 3.908408957924017e-06 1.35(0.301)
21:20675248:C:A LINC02573-LINC00320 MODIFIER intergenic_region n.20675248C>A "" 0.000994 4.139996748197304e-06 -1.7(0.441)
7:48617884:G:C ABCA13 MODIFIER intron_variant c.14837+2507G>C "" 0.001508 4.436086439314327e-06 -1.27(0.307)
5:43278469:C:T NIM1K MODIFIER intron_variant c.561+1144C>T "" 0.00048 4.602565735813563e-06 1.89(0.453)
5:43331942:G:A HMGCS1-CCL28 MODIFIER intergenic_region n.43331942G>A "" 0.00048 4.613175745603791e-06 1.88(0.453)
7:102152804:C:T CUX1 MODIFIER intron_variant c.708-5756C>T "" 0.047446 4.8640720569146186e-06 0.2(0.044)
4:156053323:A:G CTSO-PDGFC MODIFIER intergenic_region n.156053323A>G "" 0.00084 4.8640720569146186e-06 1.39(0.309)
18:52592201:G:C DCC MODIFIER intron_variant c.92-159853G>C "" 0.008382 4.977370849789361e-06 0.46(0.1)
7:21035767:C:T LINC01162-SP4 MODIFIER intergenic_region n.21035767C>T "" 0.00108 5.000345349769783e-06 -1.68(0.44)
7:102207270:T:C CUX1 MODIFIER intron_variant c.3163+2100T>C "" 0.04784 5.116818355403073e-06 0.2(0.044)
15:73689508:A:C CD276 MODIFIER intron_variant c.-55+5048A>C "" 0.009805 5.395106225151279e-06 0.42(0.092)
4:142173283:T:C INPP4B MODIFIER intron_variant c.1359+349A>G "" 0.000926 5.45757861091271e-06 1.34(0.302)
9:68731165:C:G PIP5K1B MODIFIER intron_variant c.-242-11336C>G "" 0.001131 5.662392890382535e-06 1.21(0.274)
4:40799139:G:A NSUN7 MODIFIER intron_variant c.1400+235G>A "" 0.000703 5.780960474057175e-06 1.59(0.368)
6:170287284:C:G DLL1 MODIFIER intron_variant c.670+955G>C "" 0.003308 5.874893525297769e-06 -0.82(0.193)
9:24291650:C:T ELAVL2-IZUMO3 MODIFIER intergenic_region n.24291650C>T "" 0.000634 5.984115950603199e-06 1.59(0.368)
2:159090843:G:T TANC1 MODIFIER intron_variant c.62-6794G>T "" 0.000926 6.0534087475391365e-06 -1.82(0.509)
16:83499559:C:G CDH13 MODIFIER intron_variant c.1101+12904C>G "" 0.001097 6.095368972401693e-06 1.23(0.276)
5:27792728:G:A PURPL-LINC02103 MODIFIER intergenic_region n.27792728G>A "" 0.001217 6.194410750767811e-06 -1.41(0.354)
6:34139897:G:A GRM4 MODIFIER intron_variant c.-363-6038C>T "" 0.000994 6.28058358813318e-06 -1.67(0.441)
22:50768762:C:G RABL2B MODIFIER 3_prime_UTR_variant c.*14G>C "" 0.004354 6.3241185137621965e-06 0.63(0.138)
19:45654602:G:A EML2-GIPR MODIFIER intergenic_region n.45654602G>A "" 0.437453 6.353309318517436e-06 -0.09(0.019)
1:107344792:G:A NTNG1 MODIFIER intron_variant c.887+19870G>A "" 0.00204 6.546361740672747e-06 -1.05(0.254)
21:38052773:T:G DSCR4 MODIFIER downstream_gene_variant n.*1238A>C "" 0.001268 6.729766562843182e-06 1.13(0.253)
9:24571456:C:T IZUMO3-TUSC1 MODIFIER intergenic_region n.24571456C>T "" 0.000583 6.792036326171843e-06 1.64(0.383)
2:131393159:A:T RAB6D-LINC01120 MODIFIER intergenic_region n.131393159A>T "" 0.058468 6.85488226452662e-06 -0.18(0.041)
6:40769475:A:T LRFN2-LOC101929555 MODIFIER intergenic_region n.40769475A>T "" 0.004028 6.902398038402426e-06 0.65(0.144)
5:172861130:C:T ERGIC1 MODIFIER intron_variant c.20+26697C>T "" 0.006034 7.0631755426296224e-06 0.53(0.117)
3:172355265:C:T FNDC3B MODIFIER intron_variant c.2795+2182C>T "" 0.003754 7.079457843841373e-06 0.68(0.15)
11:55137519:C:G OR4A5-TRIM48 MODIFIER intergenic_region n.55137519C>G "" 0.00132 7.430191378967021e-06 1.11(0.252)
3:48504123:G:T SHISA5 MODIFIER 5_prime_UTR_variant c.-29C>A "" 0.004988 7.568328950209736e-06 -0.64(0.149)
4:84391240:C:T LOC101928978-NKX6-1 MODIFIER intergenic_region n.84391240C>T "" 0.003668 7.709034690644294e-06 -0.74(0.174)
5:161899351:T:C GABRA1 MODIFIER 3_prime_UTR_variant c.*1929T>C "" 0.012359 7.925013304804718e-06 -0.4(0.091)
6:6607089:T:C LY86-AS1 MODIFIER intron_variant n.195+15543A>G "" 0.001491 8.147042840208388e-06 1.04(0.235)
1:30417149:C:T LINC01648-MATN1 MODIFIER intergenic_region n.30417149C>T "" 0.003394 8.165823713585922e-06 -0.78(0.184)
16:11450043:A:T LOC400499 MODIFIER intron_variant c.4257+566T>A "" 0.000583 8.184647881347903e-06 -2.31(0.688)
15:64785008:C:T RBPMS2-PIF1 MODIFIER intergenic_region n.64785008C>T "" 0.008159 8.203515443298177e-06 0.46(0.102)
11:8762678:T:G DENND2B MODIFIER intron_variant c.-25-11953A>C "" 0.072746 8.260379495771783e-06 -0.16(0.037)
2:157559399:C:T ACVR1C MODIFIER intron_variant c.305-3067G>A "" 0.001388 8.356030182312474e-06 -1.3(0.328)
7:44222379:G:A CAMK2B MODIFIER intron_variant c.1598-1478C>T "" 0.170878 8.356030182312474e-06 0.11(0.025)
21:43796704:C:T RRP1 MODIFIER intron_variant c.423-718C>T "" 0.001406 8.394599865193982e-06 -1.25(0.314)
5:161996258:T:C LINC01202 MODIFIER intron_variant n.77+4862A>G "" 0.012341 8.669618757582162e-06 -0.39(0.09)
1:212668338:A:G FAM71A-BATF3 MODIFIER intergenic_region n.212668338A>G "" 0.00072 9.31107875467831e-06 1.53(0.356)
6:75304010:T:C FILIP1 MODIFIER downstream_gene_variant c.*4681A>G "" 0.02542 9.418895965228418e-06 0.26(0.058)
11:108932495:T:A DDX10 MODIFIER intron_variant c.2451-7751T>A "" 0.000668 9.484184633008978e-06 -2.23(0.677)
1:83745091:C:T LINC01725 MODIFIER intron_variant n.280+5107G>A "" 0.00168 9.594006315159336e-06 0.97(0.218)
11:119714668:C:T NECTIN1 MODIFIER intron_variant c.79+13807G>A "" 0.018769 9.616122783836638e-06 -0.31(0.072)
2:30107801:G:A ALK-YPEL5 MODIFIER intergenic_region n.30107801G>A "" 0.000891 9.88553094656939e-06 -1.73(0.473)
1:208351649:G:C PLXNA2-LINC01717 MODIFIER intergenic_region n.208351649G>C "" 0.009582 9.977000638225525e-06 -0.45(0.104)